Jens Petersen

Jens Petersen

Associate Professor

ORCID: 0000-0003-0138-0693

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  1. Published

    A Cross-Center Smoothness Prior for Variational Bayesian Brain Tissue Segmentation

    Kouw, W. M., Ørting, S. N., Petersen, Jens, Steenstrup Pedersen, Kim & de Bruijne, Marleen, 1 Jan 2019, Information Processing in Medical Imaging : 26th International Conference, IPMI 2019, Proceedings. Bao, S., Chung, A. C. S., Gee, J. C. & Yushkevich, P. A. (eds.). Springer, p. 360-371 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  2. Published

    A hierarchical scheme for geodesic anatomical labeling of airway trees

    Feragen, A., Petersen, Jens, Owen, M., Lo, P. C. P., Thomsen, L., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2012, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012: 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part III. Ayache, N., Delingette, H., Golland, P. & Mori, K. (eds.). Springer, p. 147-155 9 p. (Lecture notes in computer science, Vol. 7512).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  3. Published

    Airway distensibility in chronic obstructive pulmonary disease – evaluation by CT airway segmentation and lung density measurement based on the Danish lung cancer screening trial

    M. W. Wille, M., Petersen, Jens, Dirksen, A., Pedersen, J. J. H. & de Bruijne, Marleen, 2013, In: American Journal of Respiratory and Critical Care Medicine. 187, p. A2871 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  4. Published

    An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images

    Petersen, Jens, Feragen, A., Owen, M., Lo, P., Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013. 1 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  5. Published

    Analysis of airways in computed tomography

    Petersen, Jens, 2014, Department of Computer Science, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Automated quantification of bronchiectasis, airway wall thickening and lumen tapering in chest CT

    Perez-Rovira, A., Kuo, W., Petersen, Jens, A.W.M. Tiddens, H. & de Bruijne, Marleen, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  7. Published

    Automatic airway-artery analysis on lung CT to quantify airway wall thickening and bronchiectasis

    Perez-Rovira, A., Kuo, W., Petersen, Jens, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: Medical Physics. 43, 10, p. 5736-5744 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Carotid artery lumen segmentation in 3D free-hand ultrasound images using surface graph cuts

    Lorza, A. M. A., Carvalho, D. D. B., Petersen, Jens, Dijk, A. C. V., Lugt, A. V. D., Niessen, W. J., Klein, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, p. 542-549 8 p. (Lecture notes in computer science, Vol. 8150).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  9. Published

    Carotid artery wall segmentation by coupled surface graph cuts

    Arias, A., Petersen, Jens, van Engelen, A., Tang, H., Selwaness, M., Witteman, J. C. M., van der Lugt, A., Niessen, W. & de Bruijne, Marleen, 2013, Medical Computer Vision. Recognition techniques and applications in medical imaging: Second International MICCAI Workshop, MCV 2012, Nice, France, Revised Selected Papers. Menze, B. H., Langs, G., Lu, L., Montillo, A., Tu, Z. & Criminisi, A. (eds.). Springer, p. 38-47 10 p. (Lecture notes in computer science, Vol. 7766).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  10. Published

    Carotid artery wall segmentation in multispectral MRI by coupled optimal surface graph cuts

    Arias-Lorza, A. M., Petersen, Jens, van Engelen, A., Selwaness, M., van der Lugt, A., J. Niessen, W. & de Bruijne, Marleen, 2016, In: IEEE Transactions on Medical Imaging. 35, 3, p. 901-911 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Chronic Obstructive Pulmonary Disease Quantification Using CT Texture Analysis and Densitometry: Results From the Danish Lung Cancer Screening Trial

    Sørensen, L., Nielsen, Mads, Petersen, Jens, Pedersen, J. H., Dirksen, A. & de Bruijne, Marleen, 2020, In: American Journal of Roentgenology. 214, 6, p. 1269-1279

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Crowdsourced emphysema assessment

    Ørting, S. N., Cheplygina, V., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2017, Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Lee, S-L., Cheplygina, V., Balocco, S., Mateus, D., Zahnd, G., Maier-Hein, L., Dermirci, S., Granger, E., Duong, L., Carbonneau, M-A., Albarquoni, S. & Carneiro, G. (eds.). Springer, p. 126-135 10 p. (Lecture notes in computer science, Vol. 10552).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  13. Published

    Detecting emphysema with multiple instance learning

    Orting, S. N., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE, p. 510-513

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  14. Published

    Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients

    Jimenez-Solem, E., Petersen, T. S., Hansen, C., Hansen, C., Lioma, C., Igel, C., Boomsma, W., Krause, O., Lorenzen, S., Selvan, R., Petersen, J., Nyeland, M. E., Ankarfeldt, M. Z., Virenfeldt, G. M., Winther-Jensen, M., Linneberg, A., Ghazi, M. M., Detlefsen, N., Lauritzen, A. D., Smith, A. G. & 15 others, de Bruijne, Marleen, Ibragimov, Bulat, Petersen, Jens, Lillholm, Martin, Middleton, Jon Anthony, Mogensen, S. H., Thorsen-Meyer, H., Perner, Anders, Helleberg, M., Kaas-Hansen, Benjamin Skov, Bonde, M., Bonde, A., Pai, A., Nielsen, Mads & Sillesen, Martin Hylleholt, 2021, In: Scientific Reports. 11, 1, 12 p., 3246.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Diagnosis of bronchiectasis and airway wall thickening in children with cystic fibrosis: objective airway-artery quantification

    Kuo, W., de Bruijne, Marleen, Petersen, Jens, Nasserinejad, K., Ozturk, H., Chen, Y., Perez-Rovira, A. & Tiddens, H. A. W. M., Nov 2017, In: European Radiology. 27, 11, p. 4680-4689 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Dissimilarity-based classification of anatomical tree structures

    Sørensen, L., Lo, P. C. P., Dirksen, A., Petersen, Jens & de Bruijne, Marleen, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 475-485 11 p. (Lecture notes in computer science, Vol. 6801).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  17. Published

    Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation

    Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Emphysema progression is visually detectable in low-dose CT in continuous but not in former smokers

    Wille, M. M. W., Thomsen, L. H., Dirksen, A., Petersen, Jens, Pedersen, J. J. H. & Shaker, S. B., 2014, In: European Radiology. 24, 11, p. 2692-2699 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Explicit Temporal Embedding in Deep Generative Latent Models for Longitudinal Medical Image Synthesis

    Schön, Julian Elisha, Selvan, Raghav, Nygård, L., Vogelius, Ivan R. & Petersen, Jens, 13 Jan 2023, arxiv.org.

    Research output: Working paper › Preprint › Research

  20. Published

    Extracting tree structures in CT data by tracking multiple statistically ranked hypotheses

    Selvan, Raghav, Petersen, Jens, Pedersen, J. H. & de Bruijne, Marleen, 18 Oct 2019, In: Medical Physics. 46, 10, p. 4431-4440

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Extraction of Airways using Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018. 3 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  22. Published

    Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  23. Published

    Extraction of airway trees using multiple hypothesis tracking and template matching

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  24. Published

    Feature Learning Based on Visual Similarity Triplets in Medical Image Analysis: A Case Study of Emphysema in Chest CT Scans

    Nyboe Ørting, S., Petersen, Jens, Cheplygina, V., Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018 Held in Conjunction with MICCAI 2018 Granada, Spain, September 16, 2018 Proceedings. Stoyanov, D., Taylor, Z., Balocco, S. & Sznitman, R. (eds.). Springer, p. 140-149 Chapter 16. (Lecture Notes in Computer Science, Vol. 11043).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    Geodesic atlas-based labeling of anatomical trees: application and evaluation on airways extracted from CT

    Feragen, A., Petersen, Jens, Owen, M., Lo, P., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1212-1226 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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