Jens Petersen
Associate Professor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
- 2018
- Published
Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction
Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). Springer, p. 750-758 (Lecture notes in computer science, Vol. 11071).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Semi-automated detection of pulmonary congestion in patients with non-ST acute coronary syndrome by using of quantitative chest cardiac-CT analysis: Analysis of methodological aspects
Fabricius-Bjerre, A. A., Petersen, Jens, Heitmann, Merete, Elming, H., Ashraf, H., Kofoed, Klaus Fuglsang, Kuhl, J. T., Køber, Lars Valeur & Nielsen, Olav Wendelboe, 2018, In: European Journal of Heart Failure. 20, S1, p. 475-476 P1854.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- 2017
- Published
Diagnosis of bronchiectasis and airway wall thickening in children with cystic fibrosis: objective airway-artery quantification
Kuo, W., de Bruijne, Marleen, Petersen, Jens, Nasserinejad, K., Ozturk, H., Chen, Y., Perez-Rovira, A. & Tiddens, H. A. W. M., Nov 2017, In: European Radiology. 27, 11, p. 4680-4689 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crowdsourced emphysema assessment
Ørting, S. N., Cheplygina, V., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2017, Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Lee, S-L., Cheplygina, V., Balocco, S., Mateus, D., Zahnd, G., Maier-Hein, L., Dermirci, S., Granger, E., Duong, L., Carbonneau, M-A., Albarquoni, S. & Carneiro, G. (eds.). Springer, p. 126-135 10 p. (Lecture notes in computer science, Vol. 10552).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing
Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2016
- Published
Automatic airway-artery analysis on lung CT to quantify airway wall thickening and bronchiectasis
Perez-Rovira, A., Kuo, W., Petersen, Jens, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: Medical Physics. 43, 10, p. 5736-5744 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Carotid artery wall segmentation in multispectral MRI by coupled optimal surface graph cuts
Arias-Lorza, A. M., Petersen, Jens, van Engelen, A., Selwaness, M., van der Lugt, A., J. Niessen, W. & de Bruijne, Marleen, 2016, In: IEEE Transactions on Medical Imaging. 35, 3, p. 901-911 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extraction of airway trees using multiple hypothesis tracking and template matching
Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
- Published
Quantifying emphysema extent from weakly labeled CT scans of the lungs using label proportions learning
Ørting, S. N., Petersen, Jens, Wille, M., Thomsen, L. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & S. R. (eds.). CreateSpace Independent Publishing Platform , p. 31-42 11 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Visual assessment of early emphysema and interstitial abnormalities on CT is useful in lung cancer risk analysis
Wille, M. M. W., Thomsen, L. H., Petersen, Jens, de Bruijne, Marleen, Dirksen, A., Pedersen, J. H. & Shaker, S. B., 2016, In: European Radiology. 26, 2, p. 487-494 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Opfront: mesh
Petersen, Jens, 16 Aug 2015Research output: Non-textual form › Computer programme › Research
- Published
Automated quantification of bronchiectasis, airway wall thickening and lumen tapering in chest CT
Perez-Rovira, A., Kuo, W., Petersen, Jens, A.W.M. Tiddens, H. & de Bruijne, Marleen, 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Geodesic atlas-based labeling of anatomical trees: application and evaluation on airways extracted from CT
Feragen, A., Petersen, Jens, Owen, M., Lo, P., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1212-1226 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantification and visualization of variation in anatomical trees
Amenta, N., Datar, M., Dirksen, A., de Bruijne, Marleen, Feragen, A., Ge, X., Pedersen, J., Howard, M., Owen, M., Petersen, Jens, Shi, J. & Xu, Q., 2015, Research in shape modeling. Leonard, K. & Tari, S. (eds.). Springer, p. 57-79 23 p. (Association for Women in Mathematics Series, Vol. 1).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- 2014
- Published
Analysis of airways in computed tomography
Petersen, Jens, 2014, Department of Computer Science, Faculty of Science, University of Copenhagen. 135 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation
Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emphysema progression is visually detectable in low-dose CT in continuous but not in former smokers
Wille, M. M. W., Thomsen, L. H., Dirksen, A., Petersen, Jens, Pedersen, J. J. H. & Shaker, S. B., 2014, In: European Radiology. 24, 11, p. 2692-2699 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Opfront: optimal front segmentation of images
Petersen, Jens, 2014Research output: Non-textual form › Computer programme › Research
- Published
Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease
Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Nordenmark, L. H., Pedersen, J. J. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2014, In: Medical Image Analysis. 18, 3, p. 531-541 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
- Published
Airway distensibility in chronic obstructive pulmonary disease – evaluation by CT airway segmentation and lung density measurement based on the Danish lung cancer screening trial
M. W. Wille, M., Petersen, Jens, Dirksen, A., Pedersen, J. J. H. & de Bruijne, Marleen, 2013, In: American Journal of Respiratory and Critical Care Medicine. 187, p. A2871 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images
Petersen, Jens, Feragen, A., Owen, M., Lo, P., Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013. 1 p.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Carotid artery lumen segmentation in 3D free-hand ultrasound images using surface graph cuts
Lorza, A. M. A., Carvalho, D. D. B., Petersen, Jens, Dijk, A. C. V., Lugt, A. V. D., Niessen, W. J., Klein, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, p. 542-549 8 p. (Lecture notes in computer science, Vol. 8150).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Carotid artery wall segmentation by coupled surface graph cuts
Arias, A., Petersen, Jens, van Engelen, A., Tang, H., Selwaness, M., Witteman, J. C. M., van der Lugt, A., Niessen, W. & de Bruijne, Marleen, 2013, Medical Computer Vision. Recognition techniques and applications in medical imaging: Second International MICCAI Workshop, MCV 2012, Nice, France, Revised Selected Papers. Menze, B. H., Langs, G., Lu, L., Montillo, A., Tu, Z. & Criminisi, A. (eds.). Springer, p. 38-47 10 p. (Lecture notes in computer science, Vol. 7766).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Geometric tree kernels: classification of COPD from airway tree geometry
Feragen, A., Petersen, Jens, Grimm, D., Dirksen, A., Pedersen, J. J. H., Borgwardt, K. & de Bruijne, Marleen, 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 171-183 13 p. (Lecture notes in computer science, Vol. 7917).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Geometric tree kernels: classification of COPD from airway tree geometry
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A hierarchical scheme for geodesic anatomical labeling of airway trees
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Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces
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