Marleen de Bruijne

Marleen de Bruijne

Professor


  1. 2017
  2. Published

    Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  3. Fully automated lung volume assessment from MRI in a population-based child cohort study

    Ivanovska, T., Ciet, P., Rerez-Rovira, A., Nguyen, A., Tiddens, H., Duijts, L., de Bruijne, Marleen & Wörgötter, F., 2017, Proceedings of the 12th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications. SCITEPRESS Digital Library, Vol. 6. p. 53-58 6 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  4. Published

    GP-Unet: Lesion detection from weak labels with a 3D regression network

    Dubost, F., Bortsova, G., Adams, H., Ikram, A., Niessen, W. J., Vernooij, M. & de Bruijne, Marleen, 2017, Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017: 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part III. Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D. L. & Duschesne, S. (eds.). Springer, p. 214-221 8 p. (Lecture notes in computer science, Vol. 10435).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  5. Published

    Representation learning for cross-modality classification

    Tulder, G. V. & de Bruijne, Marleen, 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Müller, H., Kelm, B. M., Arbel, T., Cai, W., Cardoso, M. J., Langs, G., Menze, B., Metaxas, D., Montillo, A., Wells, W. M., Zhang, S., Chung, A. C. S., Jenkinson, M. & Ribbens, A. (eds.). Springer, p. 126-136 11 p. (Lecture notes in computer science, Vol. 10081).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  6. Published

    Segmentation of intracranial arterial calcification with deeply supervised residual dropout networks

    Bortsova, G., van Tulder, G., Dubost, F., Peng, T., Navab, N., van der Lugt, A., Bos, D. & de Bruijne, Marleen, 2017, Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017: 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part III. Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D. L. & Duchesne, S. (eds.). Springer, p. 356-364 9 p. (Lecture notes in computer science, Vol. 10435).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  7. 2016
  8. Published

    High shear stress relates to intraplaque haemorrhage in asymptomatic carotid plaques

    Tuenter, A., Selwaness, M., Arias Lorza, A., Schuurbiers, J. C. H., Speelman, L., Cibis, M., van der Lugt, A., de Bruijne, Marleen, van der Steen, A. F. W., Franco, O. H., Vernooij, M. W. & Wentzel, J. J., Aug 2016, In: Atherosclerosis. 251, p. 348–354 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Asymmetric similarity-weighted ensembles for image segmentation

    Cheplygina, V., Van Opbroek, A., Ikram, M. A., Vernooij, M. W. & de Bruijne, Marleen, 2016, 2016 IEEE International Symposium on Biomedical Imaging: from Nano to Macro. IEEE, p. 273-277 5 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  10. Published

    Automatic airway-artery analysis on lung CT to quantify airway wall thickening and bronchiectasis

    Perez-Rovira, A., Kuo, W., Petersen, Jens, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: Medical Physics. 43, 10, p. 5736-5744 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Carotid artery wall segmentation in multispectral MRI by coupled optimal surface graph cuts

    Arias-Lorza, A. M., Petersen, Jens, van Engelen, A., Selwaness, M., van der Lugt, A., J. Niessen, W. & de Bruijne, Marleen, 2016, In: IEEE Transactions on Medical Imaging. 35, 3, p. 901-911 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Combining generative and discriminative representation learning for lung CT analysis with convolutional restricted Boltzmann machines

    van Tulder, G. & de Bruijne, Marleen, 2016, In: IEEE Transactions on Medical Imaging. 35, 5, p. 1262-1272 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Early experiences with crowdsourcing airway annotations in chest CT

    Cheplygina, V., Perez-Rovira, A., Kuo, W., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, Deep Learning and Data Labeling for Medical Applications: First International Workshop, LABELS 2016, and Second International Workshop, DLMIA 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings. Carneiro, G., Mateus, D., Peter, L., Bradley, A., Tavares, J. M. R. S., Belagiannis, V., Papa, J. P., Nascimento, J. C., Loog, M., Lu, Z., Cardoso, J. S. & Cornebise, J. (eds.). Springer, p. 209-218 10 p. (Lecture notes in computer science, Vol. 10008).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  14. Published

    Extraction of airway trees using multiple hypothesis tracking and template matching

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  15. Published

    Machine learning approaches in medical image analysis: from detection to diagnosis

    de Bruijne, Marleen, 2016, In: Medical Image Analysis. 33, p. 94-97 4 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  16. Published

    Method of analyzing image for assessing condition of organ e.g. lung of patient represented in image, involves providing quantitative measure of extent of condition in image based on number of identified inspection regions

    Stick, S. M., Rosenow, T., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, IPC No. G06T-007/00, Patent No. WO2016183609-A1, 24 Nov 2016, Priority date 20 May 2015, Priority No. AU901841

    Research output: Patent

  17. Published

    Multicentre chest computed tomography standardisation in children and adolescents with cystic fibrosis: the way forward

    Kuo, W., Kemner-van de Corput, M. P. C., Perez-Rovira, A., de Bruijne, Marleen, Fajac, I., Tiddens, H. A. W. M. & van Straten, M., 2016, In: The European Respiratory Journal. 47, 6, p. 1706-1717 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published
  19. Published

    Quantification of diaphragm mechanics in Pompe disease using dynamic 3D MRI

    Mogalle, K., Perez-Rovira, A., Ciet, P., Wens, S. C. A., van Doorn, P. A., Tiddens, H. A. W. M., van der Ploeg, A. T. & de Bruijne, Marleen, 2016, In: P L o S One. 11, 7, 24 p., e0158912.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Quantifying emphysema extent from weakly labeled CT scans of the lungs using label proportions learning

    Ørting, S. N., Petersen, Jens, Wille, M., Thomsen, L. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & S. R. (eds.). CreateSpace Independent Publishing Platform , p. 31-42 11 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  21. Published

    Relation between wall shear stress and carotid artery wall thickening MRI versus CFD

    Cibis, M., Potters, W. V., Selwaness, M., Gijsen, F. J., Franco, O. H., Arias Lorza, A. M., de Bruijne, Marleen, Hofman, A., van der Lugt, A., Nederveen, A. J. & Wentzel, J. J., 2016, In: Journal of Biomechanics. 49, 5, p. 735-741 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The development of bronchiectasis on chest computed tomography in children with cystic fibrosis: can pre-stages be identified?

    Tepper, L. A., Caudri, D., Rovira, A. P., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: European Radiology. 26, 12, p. 4563-4569 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Visual assessment of early emphysema and interstitial abnormalities on CT is useful in lung cancer risk analysis

    Wille, M. M. W., Thomsen, L. H., Petersen, Jens, de Bruijne, Marleen, Dirksen, A., Pedersen, J. H. & Shaker, S. B., 2016, In: European Radiology. 26, 2, p. 487-494 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. 2015
  25. Published

    Automated quantification of bronchiectasis, airway wall thickening and lumen tapering in chest CT

    Perez-Rovira, A., Kuo, W., Petersen, Jens, A.W.M. Tiddens, H. & de Bruijne, Marleen, 2015. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  26. Cine-MRI as a New Tool to Evaluate Diaphragmatic Dysfunction in Pompe Disease

    Wens, S. C., Ciet, P., Perez-Rovira, A., Logie, K., Salamon, E., Wielopolski, P., de Bruijne, Marleen, Kruijshaar, M. E., Tiddens, H. W., van der Beek, N. A. M. E., van Doorn, P. A. & van der Ploeg, A. T., 2015, In: Neuromuscular Disorders. 2, s1, p. S57

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  27. Published

    Feature-space transformation improves supervised segmentation across scanners

    van Opbroek, A., Achterberg, H. C. & de Bruijne, Marleen, 2015, Machine learning meets medical imaging: First International Workshop, MLMMI 2015, Held in Conjunction with ICML 2015, Lille, France, July 11, 2015, Revised Selected Papers. Springer, p. 85-93 9 p. (Lecture notes in computer science, Vol. 9487).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  28. Published

    Geodesic atlas-based labeling of anatomical trees: application and evaluation on airways extracted from CT

    Feragen, A., Petersen, Jens, Owen, M., Lo, P., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1212-1226 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Label stability in multiple instance learning

    Cheplygina, V., Sørensen, L., Tax, D. M. J., de Bruijne, Marleen & Loog, M., 2015, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 539-546 8 p. (Lecture notes in computer science).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  30. Published
  31. Published

    Lung MRI and impairment of diaphragmatic function in Pompe disease

    Wens, S. C. A., Ciet, P., Perez-Rovira, A., Logie, K., Salamon, E., Wielopolski, P., de Bruijne, Marleen, Kruijshaar, M. E., Tiddens, H. A. W. M., van Doorn, P. A. & van der Ploeg, A. T., 2015, In: BMC Pulmonary Medicine. 15, 54.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    MRBrainS challenge: online evaluation framework for brain image segmentation in 3T MRI scans

    Mendrik, A. M., Vincken, K. L., Kuijf, H. J., Breeuwer, M., Bouvy, W., de Bresser, J., Alansary, A., de Bruijne, M., Carass, A., El-Baz, A., Jog, A., Katyal, R., Khan, A. R., van der Lijn, F., Mahmood, Q., Mukherjee, R., van Opbroek, A., Paneri, S., Pereira, S., Persson, M. & 9 others, Sarikaya, M. R. A. D., Smedby, Ö., Silva, C. A., Vrooman, H. A., Vyas, S., Wang, C., Zhao, L., Biessels, G. J. & Viergever, M. A., 2015, In: Computational Intelligence and Neuroscience. 2015, 16 p., 813696.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Multi-center MRI carotid plaque component segmentation using feature normalization and transfer learning

    van Engelen, A., van Dijk, A. C., Truijman, M. T. B., van't Klooster, R., van Opbroek, A., van der Lugt, A., Niessen, W. J., Kooi, M. E. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1294-1305 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    PRAGMA-CF. A quantitative structural lung disease CT outcome in young children with cystic fibrosis

    Rosenow, T., Oudraad, M. C. J., Murray, C. P., Turkovic, L., Kuo, W., de Bruijne, Marleen, Ranganathan, S. C., Tiddens, H. A. W. M. & Stick, S. M., 2015, In: American Journal of Respiratory and Critical Care Medicine. 191, 10, p. 1158-1165 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Quantification and visualization of variation in anatomical trees

    Amenta, N., Datar, M., Dirksen, A., de Bruijne, Marleen, Feragen, A., Ge, X., Pedersen, J., Howard, M., Owen, M., Petersen, Jens, Shi, J. & Xu, Q., 2015, Research in shape modeling. Leonard, K. & Tari, S. (eds.). Springer, p. 57-79 23 p. (Association for Women in Mathematics Series, Vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  36. Published

    Reply: Excess risk of cancer from computed tomography scan is small but not so low as to be incalculable

    Rosenow, T., Oudraad, M. C. J., Murray, C. P., Turkovic, L., Kuo, W., de Bruijne, Marleen, Ranganathan, S. C., Tiddens, H. A. W. M. & Stick, S. M., 2015, In: American Journal of Respiratory and Critical Care Medicine. 192, 11, p. 1397-1399 3 p.

    Research output: Contribution to journalJournal articleResearch

  37. Published

    Reversibility of trapped air on chest computed tomography in cystic fibrosis patients

    Loeve, M., Rosenow, T., Gorbunova, V., Hop, W. C. J., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2015, In: European Journal of Radiology. 84, 6, p. 1184-1190 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Transfer learning improves supervised image segmentation across imaging protocols

    van Opbroek, A., Ikram, M. A., Vernooij, M. W. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 5, p. 1018-1030 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Weighting training images by maximizing distribution similarity for supervised segmentation across scanners

    van Opbroek, A., Vernooij, M. W., Ikram, M. A. & de Bruijne, Marleen, 2015, In: Medical Image Analysis. 24, 1, p. 245-254 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Why does synthesized data improve multi-sequence classification?

    van Tulder, G. & de Bruijne, Marleen, 2015, Medical image computing and computer assisted interventions - MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I. Springer, p. 531-538 8 p. (Lecture notes in computer science, Vol. 9349).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  41. 2014
  42. Published

    Atherosclerotic plaque component segmentation in combined carotid MRI and CTA data incorporating class label uncertainty

    van Engelen, A., Niessen, W. J., Klein, S., Groen, H. C., Verhagen, H. J. M., Wentzel, J. J., van der Lugt, A. & de Bruijne, Marleen, 2014, In: PLoS ONE. 9, 4, 14 p., e94840.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Classification of COPD with multiple instance learning

    Cheplygina, V., Sørensen, L. E. B. L., Tax, D., Pedersen, J. J. H., Loog, M. & de Bruijne, Marleen, 2014, 22nd International Conference on Pattern Recognition (ICPR) 2014. IEEE, p. 1508-1513 6 p. (International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  44. Published

    Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation

    Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Evaluation of automated statistical shape model based knee kinematics from biplane fluoroscopy

    Baka, N., Kaptein, B. L., Giphart, J. E., Staring, M., de Bruijne, Marleen, Lelieveldt, B. P. F. & Valstar, E., 2014, In: Journal of Biomechanics. 47, 1, p. 122-129 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Hippocampal shape is predictive for the development of dementia in a normal, elderly population

    Achterberg, H. C., van der Lijn, F., den Heijer, T., Vernooij, M. W., Ikram, M. A., Niessen, W. J. & de Bruijne, Marleen, 2014, In: Human Brain Mapping. 35, 5, p. 2359-2371 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Learning features for tissue classification with the classification restricted Boltzmann machine

    van Tulder, G. & de Bruijne, Marleen, 2014, Medical Computer Vision: Algorithms for Big Data: International Workshop, MCV 2014, Held in Conjunction with MICCAI 2014, Cambridge, MA, USA, September 18, 2014, Revised Selected Papers. Menze, B., Langs, G., Montillo, A., Kelm, M., Müller, H., Zhang, S., Cai, W. T. & Metaxas, D. (eds.). Springer, p. 47-58 12 p. (Lecture notes in computer science).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  48. Published

    Nonrigid registration of volumetric images using ranked order statistics

    Tennakoon, R., Bab-Hadiashar, A., Cao, Z. & de Bruijne, Marleen, 2014, In: I E E E Transactions on Medical Imaging. 33, 2, p. 422-432 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease

    Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Nordenmark, L. H., Pedersen, J. J. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2014, In: Medical Image Analysis. 18, 3, p. 531-541 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Spirometer-controlled cine magnetic resonance imaging to diagnose tracheobronchomalacia in pediatric patients

    Ciet, P., Wielopolski, P., Manniesing, R., Lever, S., de Bruijne, Marleen, Morana, G., Muzzio, P. C., Lequin, M. H. & Tiddens, H. A. W. M., 2014, In: European Respiratory Journal. 43, 1, p. 115-124 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Three-dimensional carotid ultrasound plaque texture predicts vascular events

    van Engelen, A., Wannarong, T., Parraga, G., Niessen, W. J., Fenster, A., Spence, J. D. & de Bruijne, Marleen, 2014, In: Stroke. 45, p. 2695-2701 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. 2013
  53. Published

    A transfer-learning approach to image segmentation across scanners by maximizing distribution similarity

    van Opbroek, A., Ikram, M. A., Vernooij, M. W. & de Bruijne, Marleen, 2013, Machine Learning in Medical Imaging: 4th International Workshop, MLMI 2013, held in conjunction with MICCAI 2013, Nagoya, Japan, September 22, 2013. Proceedings. Wu, G., Zhang, D., Shen, D., Yan, P., Suzuki, K. & Wang, F. (eds.). Springer, p. 49-56 8 p. (Lecture notes in computer science, Vol. 8184).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  54. Published

    Airway distensibility in chronic obstructive pulmonary disease – evaluation by CT airway segmentation and lung density measurement based on the Danish lung cancer screening trial

    M. W. Wille, M., Petersen, Jens, Dirksen, A., Pedersen, J. J. H. & de Bruijne, Marleen, 2013, In: American Journal of Respiratory and Critical Care Medicine. 187, p. A2871 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  55. Published

    An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images

    Petersen, Jens, Feragen, A., Owen, M., Lo, P., Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013. 1 p.

    Research output: Contribution to conferencePosterResearchpeer-review

ID: 545222